miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|51576748|gb|CV094584.1|CV094584 CAAAGGCTTCTGGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAACCATGTGACTGTACTTCTTGAG
GCTGGGAAACCAATCTACACACCATCTTTTGCATATGGGGTGTTGAGAAGATTCTTGCCTGAGGATAAGGTTGATTCAAT
TAAGGGCCTTGCTCTCACAGCTGATGGAAATGGTGCAGTGTTTGATGTAGCAACTGAAGACCTGGACGCATTTCTCGCTG
GTCAGGAGAATGCAGCTAATGTGAGCTTAGAGGTGTTGAAGGCACTGCCACGCTTGCAAGAAAGAGACCAGTCAAGAGGG
GGACGATTTGGAGGTGGTGGCCGAGGCGGTGGCTTTGGGGGAAGAGGTGGTGGTAGTAATAGGTTCTCAGGGGGAAGAGG
TGGTCGGGGTGGTGGAGGTTTTTCAAATAGAAGAAATGATAGATTTTCTGGTGGCTCCAATCGTGGGAGGGGCCGCAG




Most similar to sp|Q39189|RH7_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q39189|RH7_ARATH DEAD-box ATP-dependent RNA helicase 7
           OS=Arabidopsis thaliana GN=RH7 PE=1 SV=2
          Length = 671

 Score =  135 bits (340), Expect = 1e-31
 Identities = 66/103 (64%), Positives = 87/103 (84%), Gaps = 1/103 (0%)
 Frame = +3

Query: 3   KASGYTEIKSRSLLASLDNHVTVLLEAGKPIYTPSFAYGVLRRFLPEDKVDSIKGLALTA 182
           K +G+TEIK RSLL S++N+VT+ LEAGKPIY+PSF YG+LRR LP+DKV+ I+GL+LTA
Sbjct: 527 KTAGFTEIKKRSLLTSMENYVTLHLEAGKPIYSPSFVYGLLRRVLPDDKVEMIEGLSLTA 586

Query: 183 DGNGAVFDVATEDLDAFLAG-QENAANVSLEVLKALPRLQERD 308
           D  GAVFDV   DLD F+AG Q++A ++SLEV+K +P+LQER+
Sbjct: 587 DKTGAVFDVKQSDLDLFIAGAQKSAGSMSLEVVKVMPKLQERE 629